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Software gardening...
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Software gardening...
99 followers · 277 following

Achievements

Achievement: Pull Sharkx4Achievement: StarstruckAchievement: Pair Extraordinairex4Achievement: YOLOAchievement: Quickdraw

Achievements

Achievement: Pull Sharkx4Achievement: StarstruckAchievement: Pair Extraordinairex4Achievement: YOLOAchievement: Quickdraw

Organizations

@conda-forge @cytomining @sphinx-contrib @nf-core @University-of-Colorado-Anschutz-Denver @UCBoulder @CU-DBMI @WayScience @software-gardening @xqlsystems

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d33bs/README.md

Hi, I'm Dave 👋

I'm a software engineer and technical leader focused on open-source data infrastructure, analytical systems, and software for complex scientific data.

I've been on Github for 13 years. During that time I've contributed to 110 repositories, opened 854 issues, performed 1653 code reviews, and have opened 1278 pull requests.

I maintain 20 Python packages on PyPI (downloaded 7,935 times last month), have 34 archived releases on Zenodo, and work I'm involved with has received 682 citations.

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  1. xqlsystems/duckdb-zarr xqlsystems/duckdb-zarr Public

    Query Zarr stores with SQL directly from DuckDB

    Rust 66 6

  2. cytomining/pycytominer cytomining/pycytominer Public

    Python package for image-based profiling

    Python 146 44

  3. cytomining/CytoDataFrame cytomining/CytoDataFrame Public

    An in-memory data analysis format for single-cell profiles alongside their corresponding images and segmentation masks.

    Python 14 3

  4. cytomining/CytoTable cytomining/CytoTable Public

    Harmonize high-content image analysis tool outputs for processing with Pycytominer and other Cytomining tools.

    Python 21 6

  5. WayScience/ome-arrow WayScience/ome-arrow Public

    Using OME specifications with Apache Arrow for fast, queryable, and language agnostic bioimage data.

    Python 8 1

  6. software-gardening/almanack software-gardening/almanack Public

    An open-source handbook of applied guidance and tools for sustainable software development and maintenance.

    Jupyter Notebook 26 6