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@microbiomedata

DOE-BRIDGE

Department of Energy's Biological and enviRonmental Infrastructure for Data manaGement and Exploration

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  1. nmdc-schema nmdc-schema Public

    National Microbiome Data Collaborative (NMDC) unified data model

    Python 53 16

  2. docs docs Public

    User-facing, web-based documentation about the NMDC

    Dockerfile 3 5

Repositories

Showing 10 of 85 repositories
  • nmdc-runtime Public

    Runtime system for NMDC data management and orchestration

    microbiomedata/nmdc-runtime's past year of commit activity
    Python 7 8 147 (3 issues need help) 15 Updated Nov 4, 2026
  • mg_annotation Public

    Metagenome Annotation Workflow

    microbiomedata/mg_annotation's past year of commit activity
    WDL 4 8 2 1 Updated Nov 4, 2026
  • external-metadata-awareness Public

    MongoDB + Parquet analytics for NCBI BioSample/BioProject/SRA and NMDC submission-portal metadata. Environmental triad annotation, harmonized-attribute counts, measurement discovery, value-set voting sheets.

    microbiomedata/external-metadata-awareness's past year of commit activity
    Jupyter Notebook 2 1 100 5 Updated Nov 4, 2026
  • ontology-loader Public

    Suite of tools to configure and load an ontology from the OboFoundary into the data object for OntologyClass as specified by NMDC schema

    microbiomedata/ontology-loader's past year of commit activity
    Python 0 1 17 1 Updated Nov 4, 2026
  • nmdc-schema Public

    National Microbiome Data Collaborative (NMDC) unified data model

    microbiomedata/nmdc-schema's past year of commit activity
    Python 53 CC0-1.0 16 454 (5 issues need help) 20 Updated Nov 4, 2026
  • nmdc-lakehouse Public
    microbiomedata/nmdc-lakehouse's past year of commit activity
    Python 0 MIT 1 66 7 Updated Nov 3, 2026
  • nmdc-ai-eval Public

    Framework and data for performing evaluations for AI-powered NMDC tools.

    microbiomedata/nmdc-ai-eval's past year of commit activity
    Python 2 0 48 8 Updated Nov 3, 2026
  • nmdc-metadata-suggestor-ai-tool Public

    A repository to that holds the code for the NMDC Submission portal metadata suggestor tool, powered by AI

    microbiomedata/nmdc-metadata-suggestor-ai-tool's past year of commit activity
    Python 2 2 32 6 Updated Nov 3, 2026
  • nmdc_notebooks Public

    Jupyter Notebooks demonstrating R and Python-based access to NMDC metadata and data

    microbiomedata/nmdc_notebooks's past year of commit activity
    Jupyter Notebook 7 CC0-1.0 1 3 0 Updated Nov 3, 2026
  • nmdc-lakehouse-schema Public
    microbiomedata/nmdc-lakehouse-schema's past year of commit activity
    Python 0 Apache-2.0 0 6 2 Updated Nov 3, 2026
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